GTEX-1JMPY
|
21-40
|
Male
|
GTEX-1JMPY-0526 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; minimal fat, predominantly dense fibrocollagenous stroma with numerous embedded ducts; detached floater
|
Acceptable
|
 |
GTEX-1JMPY
|
21-40
|
Male
|
GTEX-1JMPY-0626 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces; muscularis with significant admixture of smooth and skeletal muscle suggesting sampling of upper esophagus
|
Unacceptable
|
 |
GTEX-1JMPY
|
21-40
|
Male
|
GTEX-1JMPY-0726 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; target muscularis
|
Acceptable
|
 |
GTEX-1JMPY
|
21-40
|
Male
|
GTEX-1JMPY-0826 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; includes few lymphoid aggregates and clusters of submucosal glands
|
Acceptable
|
 |
GTEX-1JMPY
|
21-40
|
Male
|
GTEX-1JMPY-0926 |
Stomach
|
PAXgene |
1
|
6 pieces; full thickness sections, mild chronic gastritis
|
Acceptable
|
 |
GTEX-1JMPY
|
21-40
|
Male
|
GTEX-1JMPY-1026 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; predominantly target muscularis, but residual submucosa and strip of mucosa
|
Acceptable
|
 |
GTEX-1JMPY
|
21-40
|
Male
|
GTEX-1JMPY-1126 |
Ileum
|
PAXgene |
1
|
6 pieces; predominantly mucosa with few strips of residual muscularis (not target) and only rare lymphoid aggregate
|
Unacceptable
|
 |
GTEX-1JMPY
|
21-40
|
Male
|
GTEX-1JMPY-1226 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces
|
Acceptable
|
 |
GTEX-1JMPY
|
21-40
|
Male
|
GTEX-1JMPY-1326 |
Skin, leg
|
PAXgene |
1
|
6 pieces; well trimmed, epidermis measured 38 microns
|
Acceptable
|
 |
GTEX-1JMPY
|
21-40
|
Male
|
GTEX-1JMPY-1426 |
Adipose tissue
|
PAXgene |
1
|
2 pieces; fat with 10-15% fibrous tissue/vessels/nerve
|
Acceptable
|
 |
GTEX-1JMPY
|
21-40
|
Male
|
GTEX-1JMPY-1526 |
Artery - tibial
|
PAXgene |
1
|
2 pieces; intimal thickening
|
Acceptable
|
 |
GTEX-1JMPY
|
21-40
|
Male
|
GTEX-1JMPY-1626 |
Nerve - tibial
|
PAXgene |
1
|
4 pieces; incomplete sections, include 20-40% attached and internal fat
|
Acceptable
|
 |
GTEX-1JMPZ
|
21-40
|
Male
|
GTEX-1JMPZ-0126 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces; 3mmx0.6mm cap of tendon [circled] on edge of 1 piece; several prominent arteries & veins in same piece
|
Acceptable
|
 |
GTEX-1JMPZ
|
21-40
|
Male
|
GTEX-1JMPZ-0226 |
Skin, leg
|
PAXgene |
1
|
6 pieces; subcutaneous fat & blood vessels occupy 40% of 2 of 6 pieces; minimal dermal fat
|
Acceptable
|
 |
GTEX-1JMPZ
|
21-40
|
Male
|
GTEX-1JMPZ-0326 |
Adipose tissue
|
PAXgene |
1
|
2 pieces; fat comprises only 30%; remainder is largely fibrovascular
|
Unacceptable
|
 |
GTEX-1JMPZ
|
21-40
|
Male
|
GTEX-1JMPZ-0426 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces; 5% external fat
|
Acceptable
|
 |
GTEX-1JMPZ
|
21-40
|
Male
|
GTEX-1JMPZ-0526 |
Artery - tibial
|
PAXgene |
1
|
2 pieces; thick adventitia & perivascular stroma up to 1.5mm
|
Acceptable
|
 |
GTEX-1JMPZ
|
21-40
|
Male
|
GTEX-1JMPZ-0626 |
Thyroid gland
|
PAXgene |
1
|
2 pieces; scattered foci of atrophy
|
Acceptable
|
 |
GTEX-1JMPZ
|
21-40
|
Male
|
GTEX-1JMPZ-0726 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces; well trimmed; minimal dermal fat
|
Acceptable
|
 |
GTEX-1JMPZ
|
21-40
|
Male
|
GTEX-1JMPZ-0826 |
Liver
|
PAXgene |
1
|
2 pieces; severe vascular congestion and fibrosis consistent with cardiac cirrhosis
|
Unacceptable
|
 |
GTEX-1JMPZ
|
21-40
|
Male
|
GTEX-1JMPZ-0926 |
Spleen
|
PAXgene |
1
|
2 pieces; moderately congested
|
Acceptable
|
 |
GTEX-1JMPZ
|
21-40
|
Male
|
GTEX-1JMPZ-1026 |
Pancreas
|
PAXgene |
2
|
2 pieces; acini & islets poorly preserved; ducts in better shape
|
Acceptable
|
 |
GTEX-1JMPZ
|
21-40
|
Male
|
GTEX-1JMPZ-1126 |
Lung
|
PAXgene |
2
|
2 pieces; severe pulmonary vascular congestion & alveolar hemorrhage; moderate to severe fibrosis
|
Acceptable
|
 |
GTEX-1JMPZ
|
21-40
|
Male
|
GTEX-1JMPZ-1226 |
Kidney - cortex
|
PAXgene |
3
|
6 pieces; no sign of chronic disease
|
Acceptable
|
 |
GTEX-1JMPZ
|
21-40
|
Male
|
GTEX-1JMPZ-1326 |
Adrenal glands
|
PAXgene |
2
|
2 pieces; several large vessels at periphery
|
Acceptable
|
 |